MCPcounter is an R package which implements the MCP-counter method (described in Becht et al, Genome Biology 2016 (in press)). This method was developed via a collaboration of the CIT program with Catherine Sautès-Fridman and Hervé Fridman’s lab (UMRS 872, Centre de Recherche des Cordeliers). It predicts the abundance of 10 cell populations (8 immune populations, endothelial cells and fibroblasts) from transcriptomic profiles of human tissues.

Reference
Etienne Becht, Nicolas A. Giraldo, Laetitia Lacroix, Bénédicte Buttard, Nabila Elarouci, Florent Petitprez, Janick Selves, Pierre Laurent-Puig, Catherine Sautès-Fridman, Wolf Herman Fridman, Aurélien de Reyniès. Estimating tissue-infiltrating immune and other stromal populations’ abundances using gene expression. Genome Biology, 2016 Oct 20;17(1):218.

Table of MCP-counter Transcriptomic Markers
genes (v1.1.0) and affymetrix probe sets (v1.1.0)

Commercial use

Users from industry or other commercial organizations, please contact INSERM Transfert (matthieu.collin@inserm-transfert.fr).

Download request form (non-profit use)

MCP-counter is freely available for academic purpose. Academic users wishing to use the R package MCPcounter must fill the identification form below and will be promptly provided with the corresponding software package. The license agreement can be found here Licence pdf.

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